Solutions and reagents
Xylene

Ethanol, anhydrous denatured, histological grade (100%, 95%, 70%)

Washing buffer:
TBST washing buffer: 1XTBS/0.1% Tween-20
To prepare stock solution of 10X TBS: add 24.2 g Trizma base and 80 g sodium chloride to 1L of dH2O. Adjust pH to 7.6.
Working solution: 1XTBST/0.1% Tween-20: add 100ml 10XTBS to 900 ml dH2O. Add 1 ml Tween-20 and mix well.

Distilled water (dH2O)

Antigen Retrieval Solution:
0.01M Sodium Citrate Buffer, pH 6.0
To prepare stock solutions: Solution A. 0.1 M citric acid solution: dissolve 21.0 g of citric acid, monohydrate (C6H8O7.H2O) in 100 ml of dH2O. Solution B. 0.1M sodium citrate solution: dissolve 29.4 g trisodium citrate dihydrate (C6H5Na3O7.2H2O) in 100 ml of dH2O.
Working solution: Add 9 ml of Stock solution A and 41 ml of stock solution B to 450 ml of dH2O. Adjust pH to 6.0.

3% Hydrogene Peroxide

Blocking buffer:
1xPBS: This buffer is made by dissolving 8g of NaCl, 0.2g of KCl, 1.44g of Na2HPO4 and 0.24g of KH2PO4 into 800ml of distilled water. Then adjust the pH to 7.4 with HCl, and add H2O to 1 liter. Add 10% serum to make the final blocking buffer (serum origin depends on the host of the secondary antibody)

Hematoxylin QS (catalog #H-3404 from Vector Laboratories, Inc.)

Permanent Mounting medium (VectaMount, catalog# H-5000 Vector Laboratories, Inc.)

Protocol
Deparaffinization/Rehydration
Heat slides in an oven at 65 °C for 1 hour.

De-paraffinize/hydrate using the following series of washes: two Xylene washes (5 min each), followed by two 100% ethanol rinses (5 min each), followed by 95% ethanol, 70% ethanol, 50% ethanol, 30% ethanol, followed by H2O and a TBST wash for 5 min on a shaker.
Antigen Retrieval
Immerse slides into staining dish containing Antigen Retrieval Solution.

Place covered staining dish into the rice cooker. Add 120 mL d H2O and press “cook”.

When “cook” is turned to “warm” (about 20–30 min), unplug the cooker and remove the staining dish to the bench top.

Allow to cool down, without cover, for 20 min.
Staining
Wash slides with TBST for 5 min on a shaker.

Inactivate endogenous peroxidase by covering tissue with 3% hydrogen peroxide for 10 min.

Wash slides three times with TBST (3 min each on a shaker).

Block slides with the blocking solution for 1 hour.

Dilute primary antibody in the blocking buffer per recommendation on the data sheet.

Apply primary antibody to each section and incubate overnight in the humidified chamber (4 oC).

Wash slides three times with TBST (3 min each on a shaker).

Apply to each section secondary HRP-conjugated anti-rabbit antibody diluted in the blocking solution per manufacturer’s recommendation; incubate for 1 hour at room temperature.

Wash slides three times with TBST (3 min each on a shaker).

Add freshly prepared DAB substrate to the sections.

Incubate tissue sections with the substrate at room temperature until suitable staining develops (generally 2–5 min).

Rinse sections with water.

Counterstain with Hematoxylin.

Rinse sections with water.

Dehydrate samples using two rinses with 100% Ethanol (20 dips per rinse) followed by two rinses with Xylene (30 dips per rinse).

Mount coverslips on slides using Permount medium.